rs17165446 chr6:157596101 T>A
- Sequence
agggctcctcaaaacaccacccag[T/A]gattgaaaactgcatagcttcggt
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM12890 (Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.17 | 0.01 | 1.33 | n/a | No Hit | |||
| STAG1_HUMAN | 2.06 | -2.03 | 1.00 | n/a | n/a |
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