rs17167484 chr5:134371303 T>G

Sequence
gaacacagagaacacaaatttgtc[T/G]attacttcaggaagcccaggggga
ASB in cell types
primary B-CLL cells 22RV1 (prostate carcinoma) CD14+ monocytes breast tumor
ASB for transcription factors
BRD4_HUMAN ANDR_HUMAN STAT1_HUMAN TYY1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD4_HUMAN 2.18 -1.09 2.0·10-31.00 3.00 n/a n/a
ANDR_HUMAN 2.51 n/a 3.8·10-31.00 2.67 n/a No Hit
STAT1_HUMAN 1.90 -1.15 6.5·10-31.00 2.00 n/a No Hit
TYY1_HUMAN 2.10 -3.97 0.011.00 1.50 n/a No Hit
ESR1_HUMAN 2.20 -4.66 0.021.00 2.25 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease,  fasting insulin,  hdl cholesterol,  homa-b,  homa-ir,  refractive error,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Hypothalamus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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