rs17168163 chr7:134986279 G>A
- Sequence
ctcctctgaggcaacagccgaagt[G/A]cagaccactgggaataaatagctg
- ASB in cell types
- K562 (myelogenous leukemia) GM12892 (female B-cells lymphoblastoid cell line) GM02610 (Lymphoblastoid Cell Lines) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN ANDR_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.52 | 0.23 | 1.15 | n/a | No Hit | |||
| STAG1_HUMAN | 1.68 | 0.50 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.48 | -0.54 | 1.75 | n/a | No Hit | |||
| KDM1A_HUMAN | 0.03 | 1.44 | 1.25 | n/a | n/a | |||
| SPT5H_HUMAN | -0.82 | 1.93 | 1.90 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GRASP diastolic blood pressure (dbp), hdl cholesterol, ldl cholesterol, parkinsons disease, rheumatoid arthritis, systolic blood pressure (sbp), years of education
GTEx eQTL Adrenal_Gland, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis