rs17169194 chr7:7641066 A>C

Sequence
atacccgcccccttggagatgggc[A/C]gcggggtcatcagtgatcttgatc
ASB in cell types
K562 (myelogenous leukemia) primary B-CLL cells
ASB for transcription factors
PKNX1_HUMAN SOX6_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PKNX1_HUMAN 2.42 -4.65 0.041.00 2.00 -4.27 Concordant
SOX6_HUMAN 2.73 n/a 0.041.00 2.00 n/a No Hit
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Motif analysis

PKNX1_HUMAN Concordant
PKNX1_HUMAN pic

Genetic associations

EMBL-EBI estimated glomerular filtration rate,  serum creatinine levels
GRASP alzheimers disease,  blood urea nitrogen,  salmonella-induced pyroptosis,  sporadic creutzfeldt-jakob disease
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cortex,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Lung,  Nerve_Tibial,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid

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