rs17171770 chr5:138179126 C>T
- Sequence
cctcgtgggcggagttgtgctctg[C/T]ggctgcgaaagtccagcttcggcg
- ASB in cell types
- K562 (myelogenous leukemia) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) HS578T (invasive ductal breast carcinoma) CD34+ hematopoietic stem cells-derived proerythroblasts
- ASB for transcription factors
- SMAD2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD2_HUMAN | 1.96 | -0.93 | 2.00 | 3.40 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid