rs171724 chr5:123835811 A>G
- Sequence
aaaatgcaatttgatgctgattag[A/G]ttttgtcaggaccttaagcctaaa
- ASB in cell types
- iPSC (induced pluripotent stem cells) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- DUX4_HUMAN MEF2B_HUMAN ARNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| DUX4_HUMAN | -2.97 | 3.27 | 1.00 | 0.38 | Weak Concordant | |||
| MEF2B_HUMAN | -3.67 | 3.35 | 1.00 | n/a | No Hit | |||
| ARNT_HUMAN | -2.46 | 2.80 | 1.00 | n/a | No Hit |
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Motif analysis
