rs17173 chr7:104884019 T>C
- Sequence
atggaatcacacagacaaggcttc[T/C]gggtctagccctgcctcgtaaaac
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) VCaP (prostate carcinoma) monocytes from periferal blood
- ASB for transcription factors
- ELF1_HUMAN E4F1_HUMAN SPI1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | -3.04 | 3.15 | 1.25 | 6.72 | Concordant | |||
| E4F1_HUMAN | -3.30 | 2.24 | 1.50 | 3.93 | Concordant | |||
| SPI1_HUMAN | 0.20 | 1.23 | 1.40 | 3.69 | Concordant |
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Motif analysis
