rs17173026 chr19:35248176 A>T
- Sequence
tgggggaggtggcgaaaacttccg[A/T]agtggaattccaacttttcctggc
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor RMG-1 HCT-116 (colon carcinoma)
- ASB for transcription factors
- ARI1A_HUMAN ESR1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1A_HUMAN | n/a | 2.73 | 3.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.41 | 0.67 | 2.33 | n/a | No Hit | |||
| CTCF_HUMAN | 1.08 | 0.15 | 1.43 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Colon_Transverse, Esophagus_Muscularis, Lung, Nerve_Tibial, Prostate, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid