rs171773 chr5:115602062 C>A

Sequence
tggccccagcccaccccgcgcccc[C/A]ggcggcggcccccgccctagcgcc
ASB in cell types
GBM39 (Human brain tumor) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
REQU_HUMAN CTCF_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
REQU_HUMAN n/a 2.30 1.000.04 1.00 n/a n/a
CTCF_HUMAN 1.27 0.57 0.041.00 1.40 3.07 Discordant
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Motif analysis

CTCF_HUMAN Discordant
CTCF_HUMAN pic

Genetic associations

No data available

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