rs17193922 chr16:53510718 C>G

Sequence
gctcatacagattttaaacaaact[C/G]cttcccttaaaagaaaaagaaatc
ASB in cell types
A549 (lung carcinoma) foreskin keratinocyte DOHH2 (diffuse large B-cell lymphoma)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
A549 (lung carcinoma) 0.20 1.04 0.937.0·10-4 2.00
foreskin keratinocyte 0.43 n/a 0.021.00 2.67
DOHH2 (diffuse large B-cell lymphoma) 1.67 0.24 0.041.00 1.00
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Motif analysis

No data available

Genetic associations

EMBL-EBI hip circumference adjusted for bmi,  intelligence
GRASP body mass index (bmi),  height,  total cholesterol,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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