rs17196808 chr20:50292743 C>T
- Sequence
tattaatgacccggagccacatga[C/T]ggagcatgacacagcacttttggg
- ASB in cell types
- BEAS-2B (bronchial epithelium) K562 (myelogenous leukemia) CD14+ monocytes MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- GCR_HUMAN STAT1_HUMAN TF65_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.77 | 0.24 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 4.21 | n/a | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | 1.89 | 0.15 | 2.40 | n/a | No Hit | |||
| ESR1_HUMAN | 1.82 | 0.58 | 3.39 | n/a | No Hit | |||
| CREM_HUMAN | 2.98 | -5.32 | 2.00 | -4.70 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood