rs17197540 chr6:31204267 T>C
- Sequence
ctgctgcttttacagtgtttacaa[T/C]taccttatttggatggaacgccct
- ASB in cell types
- CFPAC-1(pancreatic ductal adenocarcinoma) K562 (myelogenous leukemia) adult erythroblasts 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA2_HUMAN ANDR_HUMAN RBBP5_HUMAN SPI1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 2.20 | -0.72 | 1.25 | -1.27 | Weak Concordant | |||
| ANDR_HUMAN | 1.91 | -4.20 | 2.50 | n/a | No Hit | |||
| RBBP5_HUMAN | 2.07 | -4.53 | 2.00 | n/a | n/a | |||
| SPI1_HUMAN | 1.37 | 0.34 | 2.07 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood