rs17198955 chr2:189522517 T>C

Sequence
ttctgaaggcctatgaatggtcta[T/C]ggactttggacttagaaactctct
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.44 -0.41 0.031.00 2.17 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP abnormal involuntary movement scale,  homa-b,  infant head circumference,  ldl cholesterol change with statins,  tardive dyskinesia
GTEx eQTL Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Muscle_Skeletal,  Thyroid,  Whole_Blood

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