rs17201978 chr8:121151341 C>T

Sequence
atagataagtatcaaatggataaa[C/T]gaattggataggctgagacaggta
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
ESR1_HUMAN FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 0.14 0.94 1.004.4·10-5 1.81 n/a No Hit
FOXA1_HUMAN 0.24 1.03 1.001.2·10-3 2.03 n/a No Hit
ANDR_HUMAN 1.95 -0.90 0.041.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  fasting blood glucose,  fasting insulin,  homa-ir,  infant head circumference,  refractive error,  waist hip ratio

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