rs17206679 chr19:48838980 C>G

Sequence
cactatcacccaatttccttgatg[C/G]agaagtaggatctgctattgacca
ASB in cell types
WA09 (embryonic stem cells) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ZN143_HUMAN IKZF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN143_HUMAN n/a 3.56 1.001.8·10-9 1.33 n/a No Hit
IKZF1_HUMAN -2.66 2.57 1.006.9·10-3 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP birth weight,  hdl cholesterol,  ldl cholesterol,  systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Stomach,  Thyroid,  Vagina,  Whole_Blood

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