rs17207142 chr19:53520824 C>T
- Sequence
caaggcaggacgcccttagggtcg[C/T]gtagagttgcatgctgggaaatcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HUVEC-C (HUVEC, umbilical vein endothelial cells) LNCaP (prostate carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- TF65_HUMAN STAG1_HUMAN CREB1_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.74 | n/a | 2.40 | n/a | No Hit | |||
| STAG1_HUMAN | 1.54 | 0.37 | 1.17 | n/a | n/a | |||
| CREB1_HUMAN | 1.87 | -1.07 | 1.10 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.00 | -1.52 | 1.00 | n/a | n/a | |||
| ZN687_HUMAN | 1.40 | -2.60 | 1.33 | n/a | n/a |
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Motif analysis
