rs17209882 chr17:54968711 C>G
- Sequence
aggtcaaatctcgcgaggcgtgct[C/G]cgtctcgcgagatctgggttgagc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) breast tumor adult erythroblasts
- ASB for transcription factors
- ANDR_HUMAN KLF5_HUMAN NR2C1_HUMAN TET1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.71 | n/a | 2.00 | n/a | No Hit | |||
| KLF5_HUMAN | -1.61 | 1.91 | 1.00 | n/a | No Hit | |||
| NR2C1_HUMAN | 0.50 | 2.79 | 2.00 | n/a | No Hit | |||
| TET1_HUMAN | -1.24 | 1.61 | 1.00 | n/a | n/a | |||
| EP300_HUMAN | -0.15 | 2.59 | 1.50 | n/a | n/a |
Items per page:
1 – 5 of 8
Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Spleen, Whole_Blood