rs17210045 chr7:76294759 G>C
- Sequence
acccccggcgctctgattactgtc[G/C]tccatattttcaattcccagcagg
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells) HUVEC-C (HUVEC, umbilical vein endothelial cells) 22RV1 (prostate carcinoma) breast tumor
- ASB for transcription factors
- TCF21_HUMAN ANDR_HUMAN SUH_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 1.40 | n/a | 3.00 | 0.59 | Weak Discordant | |||
| ANDR_HUMAN | 2.91 | -0.19 | 1.67 | n/a | No Hit | |||
| SUH_HUMAN | 2.69 | -4.93 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood