rs17214656 chr15:79923823 G>T
- Sequence
gggcgtggccccgtcgggcgctaa[G/T]aagacctagcgcagagaggaccgc
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) breast tumor
- ASB for transcription factors
- ANDR_HUMAN RBM25_HUMAN ESR1_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.63 | 0.00 | 1.64 | n/a | No Hit | |||
| RBM25_HUMAN | 1.38 | -0.67 | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.04 | -4.71 | 2.00 | n/a | No Hit | |||
| TCF21_HUMAN | 1.51 | n/a | 3.00 | n/a | No Hit | |||
| JUN_HUMAN | 1.10 | 0.10 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood