rs17215777 chrX:14027809 G>A

Sequence
atcaaaagtgaaatatgaggccag[G/A]aacaaagttaccctctgactcagg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ATF7_HUMAN ELF1_HUMAN ATF2_HUMAN FOXK2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF7_HUMAN n/a 2.31 1.006.9·10-7 2.00 n/a No Hit
ELF1_HUMAN n/a 3.48 1.004.8·10-4 2.00 -2.28 Discordant
ATF2_HUMAN -2.13 2.53 1.002.6·10-3 1.00 n/a No Hit
FOXK2_HUMAN n/a 2.08 1.000.02 2.00 3.94 Concordant
TBX21_HUMAN -1.37 2.40 1.000.03 2.00 n/a No Hit
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Motif analysis

ELF1_HUMAN Discordant
ELF1_HUMAN pic

Genetic associations

GTEx eQTL Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid

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