rs17217845 chr12:106304024 A>G

Sequence
tgctcttcttacctgccaacggat[A/G]atgagttaatctcagtggttccca
ASB for transcription factors
RFX5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RFX5_HUMAN n/a 3.23 1.001.1·10-3 3.00 2.29 Concordant
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Motif analysis

RFX5_HUMAN Concordant
RFX5_HUMAN pic

Genetic associations

GRASP acute lung injury following major trauma,  waist hip ratio
GTEx eQTL Brain_Spinal_cord_cervical_c-1,  Cells_Cultured_fibroblasts,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid,  Whole_Blood

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