rs17226699 chr9:33001715 C>G
- Sequence
gattggctgaaagaatcttgccca[C/G]ttcccagatcaaaaagcgtccgcc
- ASB in cell types
- adult erythroblasts MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN HCFC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.06 | -0.24 | 1.00 | n/a | No Hit | |||
| HCFC1_HUMAN | 1.28 | n/a | 2.50 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Liver, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood