rs17236915 chr18:74477920 C>T

Sequence
aagtaatgacacagttcctctcta[C/T]gcccacgttctagccacgcagcac
ASB in cell types
CD14+ monocytes monocyte-derived dendritic cells MDM(monocyte derived macrophages)
ASB for transcription factors
SPI1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.66 -0.65 1.7·10-51.00 1.85 n/a No Hit
STAT1_HUMAN 2.51 -1.33 8.0·10-51.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  waist hip ratio,  years of education
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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