rs17238192 chr15:55222748 C>T

Sequence
gccttcttggattctgctaaccac[C/T]aaagccacaaactaggtaacatcc
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia) CD14+ monocytes germinal center B-cells
ASB for transcription factors
STAT1_HUMAN ETS1_HUMAN CBP_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.49 n/a 1.3·10-31.00 3.00 n/a No Hit
ETS1_HUMAN -0.96 1.47 1.000.02 1.00 n/a No Hit
CBP_HUMAN 2.21 -1.47 0.041.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  bipolar disorder,  schizophrenia,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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