rs17243157 chr6:24667095 C>T

Sequence
aaagtcagtgagcaaatcgcggac[C/T]accggggctgccagctcgcctgac
ASB in cell types
K562 (myelogenous leukemia) pancreas CD14+ monocytes HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
GABP1_HUMAN ZBT40_HUMAN CTCF_HUMAN ZBT11_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABP1_HUMAN n/a 2.69 1.004.9·10-11 3.00 n/a n/a
ZBT40_HUMAN n/a 2.61 1.001.1·10-8 3.00 n/a No Hit
CTCF_HUMAN 0.21 1.20 1.002.6·10-7 1.29 n/a No Hit
ZBT11_HUMAN n/a 3.71 1.002.6·10-4 3.00 n/a n/a
NCOA1_HUMAN -0.78 2.15 0.995.8·10-3 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP refractive error
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid

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