rs17243334 chr15:67720741 A>G
- Sequence
accataacttccagtaattagtgt[A/G]ttttatgggcctttgcttcagtgg
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) HEK293T (embryonic kidney)
- ASB for transcription factors
- MEIS2_HUMAN PKNX1_HUMAN FEZF1_HUMAN SP7_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEIS2_HUMAN | n/a | 0.61 | 2.00 | 4.05 | Concordant | |||
| PKNX1_HUMAN | -0.72 | 0.75 | 1.50 | n/a | No Hit | |||
| FEZF1_HUMAN | -1.24 | 1.24 | 1.00 | n/a | No Hit | |||
| SP7_HUMAN | -0.89 | 0.89 | 1.00 | 3.09 | Concordant | |||
| IKZF3_HUMAN | -1.55 | 1.55 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 6
Motif analysis
Genetic associations
GRASP aortic valve calcium, body mass index (bmi), college completion, hdl cholesterol, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood