rs17243515 chr5:43192319 C>A

Sequence
gcggcgccctcacctcgggacatc[C/A]acacaccgaccgctcctgctccag
ASB in cell types
HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
ESR1_HUMAN ZBT17_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 0.45 1.68 1.003.4·10-3 3.38 n/a No Hit
ZBT17_HUMAN n/a 3.19 1.007.9·10-3 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol change with statins,  serum creatinine,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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