rs17272784 chr19:49362271 G>C

Sequence
aaagagggctgcgaaccattcaga[G/C]acggtcccgcaaacgcacgcctca
ASB in cell types
K562 (myelogenous leukemia) HEK293 (embryonic kidney) LNCaP C4-2 (prostate carcinoma)
ASB for transcription factors
BRD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD4_HUMAN 1.51 0.57 3.2·10-31.00 1.43 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi),  homa-b,  prop taste detection threshold
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Muscularis,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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