rs17277571 chr14:20681910 G>T

Sequence
agctcagcagaacgtttcctttag[G/T]ttccagtagtaatgctgctttagc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
FOXK2_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN -0.63 3.22 0.865.7·10-3 1.75 n/a No Hit
ANDR_HUMAN 2.32 0.34 0.051.00 2.00 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GRASP hypertension (early onset hypertension),  infant head circumference,  ldl cholesterol change with statins,  total cholesterol change with statins
GTEx eQTL Esophagus_Mucosa,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

Download