rs17280260 chr3:150546992 G>A
- Sequence
ctttcttgatatagcgtggcaatc[G/A]gaagtgaagtctccgcctctgggc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) primary B-CLL cells
- ASB for transcription factors
- FOXK2_HUMAN ANDR_HUMAN GABPA_HUMAN THA11_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 3.10 | n/a | 1.25 | n/a | No Hit | |||
| ANDR_HUMAN | 3.20 | n/a | 2.00 | n/a | No Hit | |||
| GABPA_HUMAN | 1.42 | -0.42 | 1.47 | -4.62 | Concordant | |||
| THA11_HUMAN | 2.76 | -2.50 | 1.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cortex, Cells_Cultured_fibroblasts, Skin_Sun_Exposed_Lower_leg, Whole_Blood