rs17285274 chr12:106358097 C>T

Sequence
cgcatgcccagagcgtcgcgcttg[C/T]gagtcttttttccagagccggcct
ASB in cell types
SUM159PT (Triple negative breast cancer) K562 (myelogenous leukemia) adult erythroblasts GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
STAG1_HUMAN RBBP5_HUMAN BRD2_HUMAN NELFE_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN -0.89 1.95 1.007.1·10-6 1.06 n/a n/a
RBBP5_HUMAN 3.06 n/a 1.6·10-31.00 2.00 n/a n/a
BRD2_HUMAN 2.10 -1.72 2.4·10-31.00 1.00 n/a n/a
NELFE_HUMAN 1.41 0.41 0.010.94 2.83 n/a n/a
RFOX2_HUMAN 1.35 -3.94 0.021.00 2.00 n/a n/a
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Motif analysis

STAT1_HUMAN Weak Discordant
STAT1_HUMAN pic

Genetic associations

GRASP rheumatoid arthritis,  urinary albumin-to-creatinine ratio
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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