rs17287442 chr2:171491511 G>C
- Sequence
aagttctttgggtgtttttcacct[G/C]ctggtggccgtggatggaatcaat
- ASB in cell types
- GM10847 (female B-cells Lymphoblastoid Cell Lines) K562 (myelogenous leukemia) Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN NFIC_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.44 | 3.66 | 1.30 | 2.45 | Concordant | |||
| NFIC_HUMAN | -2.11 | 2.53 | 1.00 | n/a | No Hit | |||
| ARI1B_HUMAN | -2.56 | 2.48 | 1.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
