rs17300347 chr1:173188024 T>A
- Sequence
gagaacttaactaaaaaatgaata[T/A]tcgtgtggaaaccactaggggttg
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM12891 (male B- cells lymphoblastoid cell line) GM12892 (female B-cells lymphoblastoid cell line) GM17942 (lymphoblastoid cell)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.39 | -0.08 | 1.21 | n/a | No Hit | |||
| STAG1_HUMAN | 2.23 | -2.02 | 1.17 | n/a | n/a |
Items per page:
1 – 2 of 2