rs17301375 chr5:43009427 A>G
- Sequence
gggggttcctattacaaaacagga[A/G]cttgcaacgactacgtaggcacgg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia) THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- ELF1_HUMAN SPI1_HUMAN IKZF2_HUMAN MEF2B_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | 4.31 | -4.00 | 1.00 | -3.90 | Concordant | |||
| SPI1_HUMAN | 2.62 | -0.20 | 1.40 | -4.11 | Concordant | |||
| IKZF2_HUMAN | 2.08 | -1.38 | 1.00 | n/a | n/a | |||
| MEF2B_HUMAN | 2.70 | -2.57 | 1.00 | -2.24 | Concordant | |||
| BRD4_HUMAN | 1.26 | -0.65 | 1.36 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Nerve_Tibial, Pancreas, Stomach, Testis