rs17302165 chr1:174970238 A>G

Sequence
agaaggtagccggatctccattca[A/G]tcagggtcaattcagccttacctc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
FOXK2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN 3.05 n/a 4.1·10-41.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP obesity with early age of onset (age >2),  total cholesterol,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Testis,  Thyroid,  Whole_Blood

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