rs17306827 chr2:173899208 G>A
- Sequence
ttcacacctactgtcgcttttgct[G/A]tgcgtcatcagtcacataatgact
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM18486 (Lymphoblastoid Cell Lines) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- TBX21_HUMAN STAG1_HUMAN IKZF2_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | n/a | 5.13 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | -4.90 | 3.94 | 1.62 | n/a | n/a | |||
| IKZF2_HUMAN | -4.09 | 4.13 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | n/a | 3.52 | 3.75 | n/a | n/a | |||
| CREB1_HUMAN | -0.98 | 2.75 | 1.00 | 0.33 | Weak Concordant |
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Motif analysis
