rs17317270 chr5:14768106 C>T

Sequence
ccttaccttatttactttcagatt[C/T]gcagttatgtgagtaagcattagc
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) breast tumor
ASB for transcription factors
FOXA1_HUMAN AHR_HUMAN GATA3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.72 0.30 1.6·10-141.00 3.09 n/a No Hit
AHR_HUMAN 2.19 -1.01 1.8·10-41.00 3.00 n/a No Hit
GATA3_HUMAN 1.56 -0.24 7.3·10-30.89 3.25 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP obesity with early age of onset (age >2),  rheumatoid arthritis

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