rs17317411 chr1:209787969 T>C

Sequence
aggaaaaatgtggtacaagaacaa[T/C]gcagaaggattctgttccaggcag
ASB in cell types
breast tumor 22RV1 (prostate carcinoma)
ASB for transcription factors
ESR1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 3.58 n/a 6.3·10-51.00 2.00 n/a No Hit
ANDR_HUMAN 2.71 -4.33 8.5·10-41.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP bipolar disorder,  cystatin c in serum,  hdl cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Brain_Cerebellum,  Brain_Spinal_cord_cervical_c-1,  Brain_Substantia_nigra,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Spleen,  Testis,  Thyroid,  Whole_Blood

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