rs17322173 chr5:68447763 T>C
- Sequence
cattttcgcctgggccacagatat[T/C]acacatttcccctcaccctacatt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ATF7_HUMAN TBX21_HUMAN IKZF2_HUMAN MEF2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF7_HUMAN | -0.26 | 3.21 | 1.25 | n/a | No Hit | |||
| TBX21_HUMAN | -3.18 | 2.24 | 1.50 | 4.09 | Concordant | |||
| IKZF2_HUMAN | -1.66 | 2.17 | 1.00 | n/a | n/a | |||
| MEF2B_HUMAN | -2.29 | 2.64 | 1.00 | n/a | No Hit | |||
| ARNT_HUMAN | -2.04 | 2.53 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP cystatin c in serum, ldl cholesterol, serum creatinine, transmission distortion, urinary albumin-to-creatinine ratio