rs17322390 chr4:76601976 G>A

Sequence
aagggttcacttctcagctgattg[G/A]ttcagcactctgtggacacacagc
ASB in cell types
K562 (myelogenous leukemia) NALM-6 (adult B acute lymphoblastic leukemia)
ASB for transcription factors
HTF4_HUMAN NCOR1_HUMAN TAL1_HUMAN SOX6_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HTF4_HUMAN 2.54 -4.79 4.0·10-61.00 2.00 n/a No Hit
NCOR1_HUMAN 2.51 n/a 3.1·10-51.00 2.00 n/a n/a
TAL1_HUMAN 2.17 -1.96 5.7·10-41.00 1.67 1.34 Weak Discordant
SOX6_HUMAN 2.42 n/a 5.8·10-41.00 2.00 n/a No Hit
REQU_HUMAN 2.26 -4.18 3.0·10-31.00 2.00 n/a n/a
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Motif analysis

TAL1_HUMAN Weak Discordant
TAL1_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  diastolic blood pressure (dbp),  ldl cholesterol,  ldl cholesterol change with statins
GTEx eQTL Adipose_Visceral_Omentum,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Heart_Left_Ventricle,  Nerve_Tibial

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