rs17323934 chr7:26864711 C>G
- Sequence
ggggtccaactgcgcatgtgtatt[C/G]ctcggttttcccggccccagaaga
- ASB in cell types
- primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line) naive IgD+ B cells T47D (invasive ductal carcinoma)
- ASB for transcription factors
- IKZF1_HUMAN BRD4_HUMAN NRF1_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 1.38 | -3.73 | 1.38 | n/a | n/a | |||
| BRD4_HUMAN | 2.10 | 0.08 | 1.50 | n/a | n/a | |||
| NRF1_HUMAN | -2.60 | 1.84 | 1.50 | 0.42 | Weak Concordant | |||
| IKZF2_HUMAN | 1.32 | -2.62 | 1.50 | n/a | n/a | |||
| FOXP1_HUMAN | 2.34 | -3.19 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP aortic valve calcium, cystatin c in serum, serum creatinine, total cholesterol change with statins, triglycerides change with statins
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood