rs17335817 chr2:216412329 C>T
- Sequence
gcaccactttcgccccgcccatga[C/T]gttgcagctcccgtttctcgccag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) renal cortex MDM(monocyte derived macrophages)
- ASB for transcription factors
- FOXK2_HUMAN TF65_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.45 | 0.06 | 1.75 | n/a | No Hit | |||
| TF65_HUMAN | 2.23 | n/a | 3.00 | n/a | No Hit | |||
| CREB1_HUMAN | 1.27 | 0.51 | 1.91 | -4.41 | Concordant |
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Motif analysis
