rs17344479 chr5:143595384 C>T
- Sequence
tgatgagcaaaaccaacagaggtg[C/T]tccagacaggctggctgtgctgat
- ASB in cell types
- A549 (lung carcinoma) ZR-75-1 (invasive ductal carcinoma) LNCaP (prostate carcinoma) breast tumor
- ASB for transcription factors
- GCR_HUMAN JUN_HUMAN CEBPB_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.00 | 1.25 | 2.11 | 5.36 | Concordant | |||
| JUN_HUMAN | -0.01 | 1.04 | 2.00 | n/a | No Hit | |||
| CEBPB_HUMAN | -0.16 | 1.60 | 2.00 | n/a | No Hit | |||
| EP300_HUMAN | 0.13 | 1.24 | 1.89 | n/a | n/a | |||
| BCL3_HUMAN | 0.19 | 1.48 | 2.00 | n/a | n/a |
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Motif analysis
