rs17349595 chr5:56078018 T>C
- Sequence
tatgttattgactcattgaagaaa[T/C]caggccagtacttttgaaagtccc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SRF_HUMAN IKZF2_HUMAN SMCA5_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRF_HUMAN | -2.24 | 2.60 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -0.46 | 1.24 | 1.00 | n/a | n/a | |||
| SMCA5_HUMAN | 2.35 | -1.83 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, microalbuminuria, total cholesterol change with statins, urinary albumin-to-creatinine ratio