rs17357834 chr16:19067715 G>A
- Sequence
tccccgcctttggcggctgcgccc[G/A]ggggcccggcggtccctctcaggt
- ASB in cell types
- HEK293 (embryonic kidney) breast tumor MCF7 (Invasive ductal breast carcinoma) EA.hy 926 (human umbilical vein endothelial cell line)
- ASB for transcription factors
- RFX5_HUMAN HIF1A_HUMAN ESR1_HUMAN ZN189_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX5_HUMAN | -2.63 | 2.94 | 1.00 | n/a | No Hit | |||
| HIF1A_HUMAN | 2.55 | -1.38 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.89 | 0.32 | 1.70 | n/a | No Hit | |||
| ZN189_HUMAN | -4.94 | 2.87 | 2.00 | -0.54 | Weak Discordant | |||
| RBBP5_HUMAN | 1.51 | n/a | 3.00 | n/a | n/a |
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Motif analysis
