rs17358402 chr16:71934024 C>T
- Sequence
atgacccgcagcctggggctatga[C/T]gcagcaggttccataactgaacag
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- RFX1_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | 3.19 | 1.21 | 2.00 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.78 | -5.01 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, college completion, hdl cholesterol, homa-b, homa-ir, infant head circumference, ldl cholesterol, parkinsons disease, refractive error
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Thyroid, Whole_Blood