rs17373010 chr4:139978895 G>A
- Sequence
catttccagatggcactgaaacaa[G/A]tacacatcctcctttcactttcaa
- ASB in cell types
- macrophages form periferal blood monocyte-derived dendritic cells MS-1 (Small cell lung carcinoma) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- STAG1_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.66 | -0.06 | 1.08 | n/a | n/a | |||
| SMCA4_HUMAN | 1.39 | 0.09 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, suicide attempts in bipolar disorder (substance abuse/dependence)