rs17396537 chr2:132651295 G>C
- Sequence
ttcttcctagctatgtccaccaga[G/C]ggctctagggaatgaccactctca
- ASB in cell types
- glioblastoma patient-derived cell model GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.59 | -0.44 | 2.00 | -3.80 | Concordant | |||
| STAG1_HUMAN | 2.17 | n/a | 1.00 | n/a | n/a |
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Motif analysis
