rs17405958 chr13:91525044 A>G

Sequence
gtagcacagtacgttgagtgtcag[A/G]aacatatttattaatatttataga
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 0.27 2.31 1.004.8·10-3 2.18 8.94 Concordant
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Motif analysis

ANDR_HUMAN Concordant
ANDR_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  irritible bowel syndrome,  ldl cholesterol,  ldl cholesterol change with statins,  total cholesterol,  total cholesterol change with statins,  years of education
GTEx eQTL Artery_Tibial,  Nerve_Tibial

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