rs17407806 chr18:8848403 A>G
- Sequence
gagtaggatgtgcataaaatccca[A/G]ctgtatttgaaactactgttggac
- ASB in cell types
- K562 (myelogenous leukemia) CD34+ hematopoietic stem cells-derived proerythroblasts
- ASB for transcription factors
- GATA1_HUMAN ARI1B_HUMAN NCOR1_HUMAN MTG8R_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | n/a | 2.82 | 2.00 | n/a | No Hit | |||
| ARI1B_HUMAN | -2.33 | 2.70 | 1.00 | n/a | n/a | |||
| NCOR1_HUMAN | -2.75 | 2.65 | 1.00 | n/a | n/a | |||
| MTG8R_HUMAN | n/a | 2.57 | 1.33 | n/a | n/a | |||
| TAL1_HUMAN | -1.90 | 2.29 | 1.00 | 6.46 | Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, fasting insulin, homa-b, infant head circumference